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Hi all again!
cc: @lpantano @gurgese @ThomasDesvignes @mhalushka @mlhack @keilbeck @BastianFromm @ivlachos @TJU-CMC
I propose to use the database used by the tool to put in the second column: *…
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``` sparql
PREFIX up:
PREFIX rdfs:
SELECT *
WHERE
{
?uniprot a up:Protein ;
up:mnemonic ?protein_name ;
rdfs:seeAlso ?db .
?updrugbank up:database .
BIND(iri(…
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Proposal for how this would work.
## Template/Prototype models
- Each template would live in its own model
- The model will be like any other model, but will include some additional owl:annotation tha…
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Hi,
First, congratulations on the development of Anchorwave, it seems a great addition to the Comparative Genomics toolkit!
I have several questions, the majority linked to the "Empty CDS file f…
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Hi guys,
I am playing with DATS and in the process I have tried to use several tools to expand/compact the json-ld representation:
- pyld
- json-ld playground (https://json-ld.org/playground/)
…
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Query: [celecoxibNoHop](https://github.com/NCATSTranslator/testing/blob/main/ars-requests/not-none/1.1/celecoxibNoHop.json)
PK: cf42e088-ef4a-45e1-a839-1562fb202901
PUBCHEM.COMPOUND:2662
HGNC:9604
…
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Hi,
I have been trying to incorporate Eggnog Mapper into a genome annotation pipeline ; and find that when using the "Metazoan" reference database on an annotation of a fish genome, I sometimes get…
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subtask from:
https://github.com/pombase/pombase-chado/issues/720
https://github.com/pombase/website/issues/2058
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Like discussed in last night's GA4GH call, I'd like to propose opening up discussion on how to include ethnicity in phenopackets 2.0.
My impression from the discussion was that simple enumeration o…
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Currently we don't differentiate between genes and proteins, we just lump them all under gene. However, most go annotation is at the protein level. When we have a go annotation, and we ask quickgo …