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**Describe the bug**
Floating point exception during nextgraph
**Error message**
Main task log
[6250 INFO] 2022-12-23 12:41:12 skip step: db_split
[6250 INFO] 2022-12-23 12:41:12 skip step: raw…
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Hi ~
Thanks for developing this handy program.
I am working on a haploid fungus and wondering if I can use this program as well.
I have 12 samples and generate these two files at last. It seems l…
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Dear ascat community,
I hope my message reaches you well ! First and foremost, congrats for the great and very interesting pipeline and supported analyses for cancer research ! Currently, I'm reach…
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Here are the first round reviews from the Diagnostics manuscript as an itemized list and the full text:
- [ ] Reviewer 1.1 --> #1173
- [ ] Reviewer 1.2 (this is a long one, we could split it up)
…
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Hi!
First, let me thank you for releasing and maintaining shapeit4, and with setting aside time to contend with what usually amounts to user error on part of the community (which I will likely be gu…
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I downloaded a .gb file from NCBI with "all features" and "show sequences" to use it as a reference genome, it's okay to use it to run breseq in the linux OS. However, when I run the breseq package on…
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I was testing fastgather with some fecal microbiome sample, and noticed that while fastgather does use much less memory compared to sourmash gather, it actually takes much longer to finish. When using…
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Simulate, or generate from real data, a reference distribution of (a) depth and (b) read balance on X and Y vs autosomes for (where appropriate):
- XX
- XY
- X0
- XXY
- XYY
- XXX
- XXXY
- XXXX
- XXX…
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Hello!
To detect ASD-related tandem repeat loci in my data, I'm refering to Trost et al. (2020). While I run an outlier analysis in EHdn, I have some questions.
1. I knew that depth-normalized c…
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Hello,
can you present us how we correct long reads using daccord?
i must just run` ./src/daccord reads.las reads.dam` ?
and how generete reads.las and reads.dam ?
thanks