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Hi, I'm an ArchR user that was directed to this repository https://github.com/GreenleafLab/10x-scATAC-2019 to perform CNV Analysis since the feature is not yet officially available in ArchR.
I post…
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Performing smoothening on approx. 420000 non-NA CpG-clusters generated from +-430 RRBS samples, an error occurs:
Stop worker failed with the error: wrong args for environment subassignment
Error i…
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**Attach your log file**
[ArchR-plotEmbedding-47a31fbbb49d-Date-2022-12-23_Time-15-04-58.log](https://github.com/GreenleafLab/ArchR/files/10297146/ArchR-plotEmbedding-47a31fbbb49d-Date-2022-12-23_T…
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Hi @All,
There was error when runing on below step,
ArchR logging to : ArchRLogs/ArchR-addArchRAnnotations-1e7695e8aabfe-Date-2020-10-29_Time-17-25-07.log
If there is an issue, please report to…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/shdam/pairedGSEA
Confirm the following by editing…
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I have the R package [tictoc](https://github.com/jabiru/tictoc) installed and this leads to an unexpected error in the gsva function. Somehow tictoc overrides the as.list() which leads to this [line](…
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Attempting to install bcbio from scratch is failing due to Conda errors. I'm running the following command:
```
python3 ${path_to_scripts}/bcbio_nextgen_install.py ${bcbio_install_path} --tooldir=…
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Hello and thank you for your work,
I have this piece of code
```
library(msigdbr)
all_gene_sets %
. select(-any_of(c("human_symbol", "human_entrez"))) %>% rename(human_ensembl_gene = .…
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**Describe the issue**
I am having trouble running the runAbsoluteCN function while following all of the code blocks in the [main vignette](https://bioconductor.org/packages/devel/bioc/vignettes/Pure…
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Hello,
on OS X Ventura the installation throws error
ModuleNotFoundError: No module named 'numpy'
even though it is already install
this was tried for all versions of qiime2, both with and wi…