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Currently you must run `convertGenbank2table.py` on each genome, one at a time:
`convertGenbank2table.py -g 11111.1.gbk -v 1`
This is time-consuming, especially if you want to run ITEP on hundreds o…
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We will add it as a normal separated repository, otherwise development is too difficult,
as noted in EUDAT-B2STAGE/http-api-base#5
Things to do:
- [x] Remove the submodule in a clean way. (More instr…
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This, hopefully, is a transitory issue. However, the current discussion is buried across a few different Confluence pages and in e-mails with NERSC help (though we have yet to receive a response from …
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Needs to be upgraded to new batch system (SLURM) at NERSC
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Current proposed schedule:
| Day | Topic | Lecturer(s) |
| --- | --- | --- |
| Mon | TBD | Jake Vanderplas / David Hogg |
| Tue | Machine learning | Josh Bloom |
| Wed | Bayesian statistics | Aneta …
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When opening the new Scidrive-ui (or "Scidrive2"), the browser tab shows "SciDrive of San Diego Super Computing Center UCSD". Probably want to change it to "SciDrive of Johns Hopkins University"
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Hello all,
I am trying to use the qiime parallel_assign_taxonomy_blast.py script on a supercomputing cluster. Qiime 1.9.1 via pip using the Anaconda python stack.
I am running the following comman…
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In our proposal, we need to detail which HPC cluster resource we will use for our hands-on student exercises:
> Additionally, for “hands-on” tutorials, factors include:
> - Evidence that demos/exerci…
omsai updated
8 years ago
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With EasyBuild 2.7, I am not able to setup a custom easyblocks installation anymore (according to https://github.com/hpcugent/easybuild-wiki/blob/master/Setting-up-your-own-easyblocks-repository.md).
…
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Working on your master leads to really nasty merge histories. You'll work, then merge into our master, and then continue working without pulling up to upstream, then remerging. You should keep your ma…