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Hi!
I am interested in exploring alignments and gene trees of the HOG orthogroups produced by OrthoFinder to evaluate / spot check OrthoFinder output. I am also interested in using HOG alignments a…
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ensures that the file generated have continuous recording
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The test uses SplFireObject to get a line count from a .tsv file.
$fileInfo = new \SplFileObject($fileName);
$fileInfo->seek(\PHP_INT_MAX);
$lineCount = $fileInfo->key();…
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Dear @TheSatoLab,
Could you please upload the "merged.final.tsv" and 'final.metadata.filtered.tsv' files, thanks.
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EDIT: root of problem is described here: https://github.com/bids-standard/bids-validator/issues/830#issuecomment-649869429
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Helping a friend create a her first EEG data set. Not sure about th…
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Hi aMeta devs, I'm encountering an error setting up and running aMeta that I was hoping to get some help with.
This is my first time using snakemake so apologies if this error is very obvious.
…
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## Expected Behavior
mmseqs tsv2exprofiledb "${UNIREF30DB}" "${UNIREF30DB}_db" should complete without error
## Current Behavior
Above line fails with error
tsv2db uniref30_2302_h.tsv uniref3…
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Hi Vadim and team,
I have done 3 plex dimethyl labeling on samples and am now trying to analyze them following the steps outlined in the plexDIA section. But as you can see below, after finished wi…
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Add a column indicating if a GO term has attribute "do not annotate." The source data for this field will come from:
http://current.geneontology.org/ontology/subsets/gocheck_do_not_annotate.owl
Th…
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Besides, how can we prepare the data files like *.label.tsv / *.caption.tsv / *.caption.linelist.tsv to train SwinBert on our own dataset? Thank you very much ~