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I've got some strange results when running demuxlet on a dataset of 4 pooled samples; of the ~3500 singlets detected, around 3450 are coming from two samples (split fairly evenly), leaving the two oth…
ocqub updated
4 years ago
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Hi,
I found using the current command will result in all variant id specified as "." in the bim file. Is that wrong? Shall we set variant id manually using the parameter --set-missing-var-ids?
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### Describe the bug
Games crashes when trying to apply bandage.
### Attach save file
[Mount Baldy-trimmed.tar.gz](https://github.com/user-attachments/files/16848398/Mount.Baldy-trimmed.tar.gz)
…
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Hi team! Thank you for developing this ONT reads simulator tool
I do encounter an error when compiling:
```
ln -sf libhts.so libhts.so.3
make[1]: 离开目录“/data/renqgli/softwares/packs/lrsim/htslib”
…
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Hi ANGSD Team,
I am trying to use angsd to call SNP likelihoods for my samples for each chromosome in parallel to speed things up. However, the output files (e.g., snaps.beagle.gz, etc. ) are empt…
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This is an example from drprg, Michael's data. Pandora discover and map output here: `/hps/nobackup/iqbal/mbhall/drprg/paper/results/amr_predictions/drprg/illumina/PRJNA436454/SAMN08626350/SRR6824314`…
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I am not sure if this is the same issue as
- #80
I see some zombies but the problem seems to be a stuck in D (so not killed at all?) process
```
dandi 2630713 0.0 0.0 8980 1560 ? …
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Hello,
I'm writing because I have recently trialed dropulation on a couple datasets and have found higher doublet rate estimations than anticipated and want to know if some of the parameters that I…
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Hi,
I'm trying to migrate from scikit-allel to sgkit, but I'm running into issues with the `sgkit.io.vcf` module. It looks like a cyvcf2 bug (or some C compiler config problem with my environments?…
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Moving and storing large VCF files is a problem. One option is to transform them into a more compact data format, which contains enough data to fully restore the VCF at a later date (see https://githu…