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@changebio moving our slack discussions here.
## Objective
It is non-trivial to handle all these data merger and region extraction etc for integrative analysis. I would like to revisit and exte…
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Hi, I am trying to run a test on D-stat with a single chromosome (chr38) of dog using an output of PLINK. I am only considering autosomes.
I first ran convertf in this .par file:
genotypename: D…
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We are unclear on is how to move from phased haplotypes -> ibd tracts -> ibd sharing matrix. We understand the latter is what’s required to run the program (as a .sims file). We also know you provide …
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Running windows 8.1, git bash (from intellij but git bash itself gives the same result).
…
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Hi,
I am new at imputing the mtDNA so forgive my question if it's silly please.
I noticed there are duplicate snps in the Genbank maf 0.001 file.. one snp has the rCRS allele one and the second…
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```
What steps will reproduce the problem?
1. Use a subversion repository on a server that is accessed via ssh using keys
2. The svn command line tool automatically will go through ssh which will
go …
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When I try to run a simple query:
````
select * from images where hash = 4039471674891636236;
````
I get this error:
````
ERROR: XX000: unrecognized strategy number: 2 …
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Hi,
We need to support PuTTY pageant too instead of only plain certificate files.
It will be added soon?
Regards.
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Here is an interesting unexpected thing. You can find REGENIE generated extra 4 lines for chr4 (UKB imputed array), rs530960215 is the last SNPs, but I don't know why REGENIE have extra 4 line result …