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For pip: (@terrycojones I may need you to email me the pip api token for beast2-xml for these options.)
* https://github.com/marketplace/actions/pypi-publish
* https://github.com/acorg/beast2-xml/ne…
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In TimeTreeToBEAST, should it uses IsLabelledNewick="true" or "false" as default:
BEAST 2 doc https://www.beast2.org/2014/07/28/all-about-starting-trees.html uses `IsLabelledNewick="true"`, but thi…
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From Wei:
> [...] may I ask one more question?
>
> As you see, my dataset is quite big. I use a powerful workstation equiped with Intel(R) Xeon(R) Gold 6230R CPU and 128G RAM. I want to shorten t…
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Dear Bioconda team, when running Beast2 from a Biocontainers' container, the `beauti` GUI fails to start due to a missing `libXrender.so` library:
```
$ singularity run beast2:2.6.3--hf1b8bbb_0.sif …
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Dear Johan, I have a BEAST2 output file with sampled trees. I want to analyze it with MrBayes to obtain a majority rule consensus tree. I converted the BEAST file:
beast2phy.pl --format=mb --outfi…
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Setup Maven repository in Github, which can solve the beast2 jars issue, and also can host the snapshot versions.
https://gist.github.com/fernandezpablo85/03cf8b0cd2e7d8527063
https://maven.apac…
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There was quite a demand at #TamingTheBEAST workshop for estimating tip dates. We should provide a tutorial dedicated to this task. Currently there is only this page (http://beast2.org/2015/06/09/samp…
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While checking to see if epoch models were supported by BEAST2 I see on the features page that they are not.
https://www.beast2.org/features/miscellaneous-epoch-models.html
the relevant line of …
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Dear Emmanuel,
first of all, thanks for this amazing package.
I just found an unexpected behavior when i was trying to run `splits::gmyc()` over a set of post-burnin files from BEAST2 using `p…
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Hi. I would like to be able to run BEAST2 with the BEAGLE libraries on GPU nodes. Are you aware of anyone who has done this successfully?
BEAST (and BEAST2) aren't terribly helpful in explaining h…