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Hi Henk，
I was building index for GTDB v214 and it took more than several hours for the bv version. But only 20 min for the original version:
colorid_bv build -r ./gtdb_genomes_reps_r214_name_colori…
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Hello everyone. I am looking forward to try BIGSI, but I came up with this error while trying to build the bloom filters:
```
(sepsis_py_venv) (base)
15:33:51 || ~/sepsis/BIGSI/config
[ricardo@…
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Is there any plan in putting BIGSI into [bioconda](https://bioconda.github.io/) for ease of installation and/or into [Galaxy platform](https://usegalaxy.org/) ?
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I am trying to run jellyfish on paired end fq files with this code `jellyfish count -m 31 -s 5G -t 6 -C /Infant_Metagenomic-Data/Data/Clean_Reads/FCHLCGNBBXX_L3_wHAXPI058873-95_1.fq /Infant_Metagenomi…
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With the changes in 4.0 there is more consolidation in the MinHash API, so it is probably a good time to also be more serious about versioning of the `core` crate.
## TODO:
- [ ] Create an `expe…
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Could the number of k-mers in the query be included in the output so the user can calculate the percentage of the query in each dataset (or provide the percentage as well)?
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We had issues due to dependencies updating and API changes, modifying BIGSI behaviour. I feel very strongly that we should ensure that users and devs have the exact same environment, so the execution …
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Are there any plans to upgrade the backend SBT code to use AllSome or Split sequence bloom trees, as they're faster in both creating and searching the indices?
They've been implemented, but the lic…
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* OS: OS X
* Version: `mccortex=v0.0.3-610-g400c0e3 zlib=1.2.11 htslib=1.8-17-g699ed53 ASSERTS=ON hash=Lookup3 CHECKS=ON k=3..31`
Preparation:
```
$ wget http://ftp.ebi.ac.uk/pub/software/bigsi/…
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Hi Team,
This current fasthash version of xxhash does not support neon devices such as M series from apple.
I saw this xxhash3 implementation: https://github.com/cberner/xxh3
Perhaps we can …