-
### Describe the Bug
I have an RGB image that I have been using for tests. It has been working with AICSImage, and now bioio (with bioio-tifffile). If I have bioio-tiff-glob installed, then this re…
-
At this time, installation of bioio-ome-zarr plugin is required to read and process zarr files.
-
When I run `Nuclei_localization.py` I get the following error.
```python
bioio_base.exceptions.UnsupportedFileFormatError: BioImage does not support the image: 'https://allencell.s3.amazonaws.com/ai…
-
Implementations:
- bioio
- ?
-
Hi there,
I currently have some images taken from Zeiss AxioScan, which stored images in a slightly different .czi format than my previous scanning. The new .czi file will stack all slices/scenes t…
-
Ideally bioio should support the latest numpy.
I checked with the [ruff rule for numpy 2.0 migration](https://numpy.org/devdocs/numpy_2_0_migration_guide.html#ruff-plugin), which is not (cannot pos…
-
Stop using aicsimageio and start using bioio.
-
### Describe the Bug
Multiple users have reported crashes due to dependency conflicts related to requiring GLIBC version 2.28 or greater. Ubuntu 18.04 only seems to supports up to glibc 2.27.
…
-
### Feature Description
Could you please add the ability for `bioio-sldy` to work with `.sld` files (note that these are different from `.sldy` files). This is currently blocking us from working with…
-
### Describe the Bug
For certain .czi but not all .czi files, I get following error
```
---------------------------------------------------------------------------
RuntimeError …