-
### Description of the bug
Similar to #374 perhaps, I get a `Path value cannot be null` error when running `--aligner cellrangerarc`.
My sample sheet is:
```
sample,fastq_1,fastq_2,fastq_barcode,sa…
-
Application: Cell Ranger ARC
Link: https://www.10xgenomics.com/support/software/cell-ranger-arc/latest
Cluster: Myriad
Description: Cell Ranger ARC is an advanced analytical suite designed f…
-
Hello, I'm very interested in using TRIBAL on a 10x scRNA-seq dataset, but I'm a bit confused of how to prepare for the input files and get started. Could you please share some details of the methods …
-
2024-10-02 10:35:12 [runtime] (run:local) ID.IMPORT_SEGMENTATION.XENIUM_RANGER_CS.XR_IMPORT_TRANSCRIPT_ASSIGNMENTS.fork0.join
2024-10-02 10:35:28 [runtime] (failed) ID.IMPORT_SEGMENTAT…
-
**Describe the bug**
Hi there,
I‘m using ArchR to analysis my ATAC data. And I want to do barcode filtering in `createArrowFiles` step. I found that `getValidBarcodes` could help me extract the val…
-
### Description of feature
As stated in the [10X docs](https://www.10xgenomics.com/support/software/cell-ranger/latest/analysis/running-pipelines/cr-flex-multi-frp):
> Important: In the examples be…
-
- [ ] have a cell_ranger root with subtypes
- [ ] move the make config file modulate be generic/shared for arc and multi
- [ ] count
- [ ] multi
- [ ] mkref
- [ ] mkgtf
- [ ] mkvdjref
- [ ] mkc…
-
**Is your feature request related to a problem? Please describe.**
Embeddable views of Cell Ranger HTML summary page on GigaDB. Cell Ranger is a set of analysis pipelines developed by 10X Genomics th…
-
Hi,
I am analyzing 10X multi-data with `cell ranger multi`. It has different output structures compared to `cellranger count`. Is there a way to support output from multi? Thanks a lot!
yjqiu updated
6 months ago
-
Hi there,
I have some 10X data that I'd like to try scone on. I'm trying to find alignment QC metrics in the Cell Ranger output files. Does Cell Ranger output the alignment QC metrics you reported in…