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Hi,
Excuse me. I am doing a project about TAD boundaries using scm3C-seq data of brain tissue. I can't search your cell-type identification results. Can you send me clusters and cell-type identific…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/dozmorovlab/scHiCcompare
Confirm the following by…
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Hello!
I am running a differential contact analysis and I am now looking at the Chicdiff outputs. I am struggling to understand what each column represents for both the _results.rds and the getCand…
Mavti updated
2 years ago
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Hello, the ENCODE project has another NTR request for an assay that we will need to annotate a number of experiments.
**editor preferred term:** Split-pool recognition of interactions by tag extens…
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Hi, @ay-lab
Here's a question I'd like to get your advice on.
FitHiC is able to use the raw/iced matrix file information generated by HiC-Pro as input to look for biologically significant chroma…
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Hi!
How easy/seamless is it to add community contributed plugin track? Are there any examples/demonstrations available?
Thanks,
Parul
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proposed definition:
A transcriptional cis regulatory region (ranges from 0.5kb to 3kbp) that when located between an enhancer and a promoter, the insulator prevents the enhancer from modulating expre…
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Dear all
According to your published paper, I defined regions with a z-normalized similarity score ≤−1.2 and a signal-to-noise ratio of r ≥ 0.6 as the significant changing. When using 40kb resoluti…
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Since CENP-A is not loaded in mitosis, it should be possible to add "during_interphase" to all of these.
https://www.pombase.org/term/GO:0034080
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# General Notes
This repository serves as a mostly automated p…