-
Regarding AlphaLink 2 modeling of homodimeric protein and its complex with other protein, the inherent ambiguity of self-links in homo-multimeric assemblies poses challenges in distinguishing inter- f…
-
## Property Suggestion
Most of the concepts below are from the book [Algebraic Topology](https://pi.math.cornell.edu/~hatcher/AT/AT.pdf) by Allen Hatcher and as such I will only cite the corres…
-
cresuer la possibilité de simplifier les géom complexes pour permettre d'extraire sur ces périmètres
-
Does this tool work for a protein complex?
I have a structure for a heterodimer, but should the submitted sequence include both components?
-
Hi team, thank you for your impressive work.
Unfortunately, I encountered a problem when generating homooligomeric complexes. The monomer length is 641 amino acids, but when I add more of the same …
-
1. Find all complexes in Reactome that are the catalyst for a reaction- keep these
2. Filter this for complexes that contain gene products - keep these
3. Filter for complexes that don't have an a…
-
Noting here there are still some issues with SGD's complexes:
https://release.geneontology.org/2024-09-08/annotations/sgd.gpi.gz has
>SGD:S000218003 CPX-1852 RPD3L histone deacetylase complex|RP…
-
I thought there was already an issue about this, but couldn't find it.
First problem:
```m2
needsPackage "Complexes"
R = QQ[x,y]/(x-y)
freeResolution R^1
-- error:
FreeResolutions.m2:147:17…
-
# The Problem
Simplicial complexes are often used with an arbitrary reference orientation in mind, e.g., when considering edge flows. Consider this simple example:
```python
from toponetx.class…
-
Why are the IPTM values for the locally predicted structures consistently low, with 90% being below 0.2? Is this due to insufficient accuracy of chai in antibody-antigen complexes?