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Hello
I am trying to find the annotation that was used for the 24Q2 release. Can you please let me know what Ensembl/Gencode release did you use? Also some of the files (e..g, the copy number datas…
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**Description:**
Explore the implementation of a data visualisation layer to expand the functionality and usability of widgets. Below are the suggested widgets:
1. Target Cancer DepMap Widget.
2. Tar…
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CCLE, PCAWG, and TCGA we can use the consortium-provided metadata and link it to samples.
For each sample it stores a reference to a metadata file - we already sort of have this, but the problem is…
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**Publication**: https://www.nature.com/articles/s41586-019-1186-3
**Data source**: https://depmap.org/portal/download/all/
Please keep this checklist for curation of a new study.
- [ ] [create…
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Hi Peng,
Thank you for the program. I was trying to run the code on Depmap data and it failed. it said this
~~~
X dimension 0 < 50
Regression failure. Please contact author to trouble shoot
~~~…
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**Describe the problem**
To enable cancer research, I would like to suggest including functionalities to work with cancer cell line information in TDC. In DepMap, there are updates in newer DepMap re…
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Dear Kenichi Shimada,
I am wondering whether latest data are support by shinydepmap since DepMap have quarterly update. Do we need to download the data by the users or this repository will update …
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It would be nice to include data regarding mechanism of action. Let us know how we can help.
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Hi
Great tool - thanks for writing it. I am running an RRA analysis and it crashes out with:
```
> FluteRRA(gene_summary = "SOX2.gene_summary.txt",sgrna_summary = "SOX2.sgrna_summary.txt",keyt…
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When I tried to reproduce the results, I found that some data files, such as "CCLE_DepMap_18q3_RNAseq_RPKM_20180718.gct", "CCLE_DepMap_18q3_maf_20180718.txt" , etc are missing. I would be very gratefu…