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Hi!
I am interested in exploring alignments and gene trees of the HOG orthogroups produced by OrthoFinder to evaluate / spot check OrthoFinder output. I am also interested in using HOG alignments a…
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Hello,
First I wanted to thank you for the work you have done with this package. This is my issue (connected with #302 but I did not see a solution there):
**Describe the bug**
I am trying to …
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Dear author,
I am very interested in the methodology proposed in your work. Could you please provide some insights into the functions of neigh_cons_score.py, genomic_context_conservation_table.py, …
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gene browser:
SFARI_SPARK_WES_1_CSHL_summary_variants.tsv
SFARI_SPARK_WES_1_CSHL_family_variants.tsv
gene sets:
Turner_Eichler_ajhg_2019_gene_set.csv (imeto na gene seta +, collectiona dali trqv…
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Hello!
I observe that during the execution of the program iqtree2 in compare_genomes, the parameter ‘’-o‘’ for specifying the outer class group is not included. Whether an alternative option should…
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Hello,
I have been ruing wgd on a number of species to estimate a genome duplication event following the recipes from here:
https://wgdv2.readthedocs.io/en/latest/recipes.html#wgd-dating
I am…
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Dear author,
I am very interested in your work and have encountered a few questions while reading your paper. This research calculated the relative abundance of FESNov gene families in 575 human g…
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I have a large list of >277 genes that I still need to check for paralogs
This is quite time confusing but I have a heuristic!
Could you extract the PANTHER families for these?
If a panther fa…
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I'm running panaroo 1.5.0 in a linux docker container installed via conda using the commands below. The panaroo command seems to randomly fail despite using the same exact inputs and arguments. My wor…
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I would like to submit a request that Orphanet include the term "KCNH1-Related Disorders" in your database. I was instructed to reach out to you directly from Gioconda Alyea at the National Organizati…