-
I have a large list of >277 genes that I still need to check for paralogs
This is quite time confusing but I have a heuristic!
Could you extract the PANTHER families for these?
If a panther fa…
-
Perhaps we could think about adding sub-heading in this list? It's getting a bit long.
Some ideas for headings:
- Gene lists
- Orthologs/paralogs
- Unstudied/understudied genes
- Other…
-
Hi Gerry,
I wonder if you could incorporate the "colapse_paralogs" step to the merging function. After merging, I find many issues when having paralogs in one of the merged pangenomes. It looks like …
-
Hi,
I am using hybpiper v.2.1.6 and when trying to run 'paralog_retriever' I got the following output:
#########################################################################
[INFO]: HybPipe…
-
Not really a bug but using an older version of Java results in the below. Perhaps a more graceful Java version detection and/or warning/error message? Newer Java of course works.
```
#### STEP 4: …
-
### Description of the issue:
* Paralogs are genes evolved from duplication events, and retain overlapping or redundant function. Members of a paralog group are often specifically expressed across di…
-
## Background
Currently in NGB, user can explore (work with) genes in different ways - e.g. via viewing at the "Browser" or in the "Genes" panel.
It would be convenient not just view info about th…
-
Hi Michael,
It's me again, back from the dead (sorry!). I am trying out your estimate_paralogs_from_trees.pl script after all since I think my strategy in a previous post was erroneously reporting…
-
I'm preparing to analyze shotgun genomic data for paralogs of functional genes using aTRAM 2.0 (automated target restricted assembly method). This program assembles genes from WGS reads, using a BLAST…
-
Hi,
We are analyzing Mycobacteria isolated from cystic fibrosis patients and two patients are known to have infected each other (twins). For these two genomes isolated from these two patients we obse…