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Loading the hs1 genome using the 3.0.7 pre-built fails with this error:
IGV-Web app version 2.0.6
igv.js …
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Hi,
I encountered a problem when running **EpiTraceAge_Convergence** in the step 4 of the [tutorial](https://epitrace.readthedocs.io/en/latest/MSscATAC.html#step-4-epitrace-analysis). It seems to b…
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Extrapolated from common sequencing targets from the SRA, and sequences that returned false positives during initial database screenings:
- Human genome - integration sites: https://hgdownload.soe.…
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I could not get the chromsizes.tsv data from human. It there anyone could help? thanks in advance.
scenicplus prepare_data download_genome_annotations --species "hsapiens" --genome_annotation_out_fna…
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K562 is the cell line that is parsed out of the file names. But sometimes it is labeled as K562b or as K562E, URLs below. These are depreciated cell line names, and are the same as K562.
Can we hard-…
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http://genome.ucsc.edu/FAQ/FAQdownloads.html#download19 -> http://hgdownload.cse.ucsc.edu/downloads.html#human ->
http://hgdownload.cse.ucsc.edu/goldenPath/hg38/vsMm10/
Data explanation at the to…
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I want to get gnomad211,and I run`annotate_variation.pl -downdb gnomad211 humandb -buildver hg19`
but
`NOTICE: Web-based checking to see whether ANNOVAR new version is available ... Done
NOTICE: D…
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Hey there,
I checked the extdata folder installation steps and both github and my computer cluster's extdata folder and the file named **eclip_scott_top_motif_intersect_new.txt** is not found and r…
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Hi,
I am using MEA for my analysis.
The reference file are not downloading.
Please see.
Which type of analysis do you want to do?
[1] ChIPseq
[2] RNAseq
[3] BSseq
Press 1, 2 or 3 [current: 2…
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Since I am a newbie in R and I did run ichorCNA via runIchorCNA.r which provided in ichorCNA/scripts/ dir. and got this error. What should I do?
Thank you in advance.
Error in download.file(url,…