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Hi Authors
Which HiCexplorer version you used ? I have installed the latest version, But it shows No module named HiCMatrix.
Thanks.
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Ref workflow: https://training.galaxyproject.org/training-material/topics/epigenetics/tutorials/hicexplorer/workflows/
Ref IDC feedback: https://github.com/galaxyproject/idc/issues/53
Ref reported a…
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I recently worked on cool files between GENOVA and HiCExplorer. I first converted the matrix file from hic-pro to cool file. Then we use HiCExplorer's hicNormalize and hicCorrectMatrix (--correctionMe…
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Hi ,
I'm experiencing an issue with hicPCA, where it gives a ValueError. I'm using python version 3.8.19 and hicexplorer version 3.7.2. Here is the command I run:
hicPCA --matrix CX6_200000.h5 --w…
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Hi, I have a question about hicMergeMatrixBins behavior and I would like to ask you for some clarification.
I use hicexplorer 3.7.5 working with h5 files.
I've noticed, that hicMergeMatrixBins c…
qolba updated
2 months ago
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toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplottads/hicexplorer_hicplottads/2.1.4.0
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when I install by gitclone,and try hicConvertFormat -h have this error,
Traceback (most recent call last):
File "/gpfs/home/pxx/soft/anaconda3/bin/hicConvertFormat", line 4, in
from hicexplo…
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One of my former colleague is trying to use HiCAssembler. He launched the following command:
```
assemble -m hic_corrected.h5 -o ./assembly_output --min_scaffold_length 10000 --bin_size 5000 --mi…
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Add distance decay curve.
See HiCExplorer ;
https://hicexplorer.readthedocs.io/en/latest/content/tools/hicPlotDistVsCounts.html#hicplotdistvscounts
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Hi
I tried to run HiC Assembler over conda environment with Python 2.7 and an old version of some packages as hicexplorer v2.2 and biopython v1.76 (last supported for Python 2.7), when I tried to e…