-
For Ag3 we now have a `karyotype()` function which infers a karyotype for each sample at each of several possible inversions on Chromosome 2. Suggest to also add a `karyotype_frequencies()` and `karyo…
-
It would be great to have (or link to) an example notebook showcasing this function, using the [API example](https://github.com/malariagen/malariagen-data-python/blob/master/notebooks/karyotype.ipynb)…
-
Should be able to do both a small chromosome overview (as was implemented in Dalliance 0.7 and earlier), and an overview of _all_ chromosomes.
Does it make sense to share code between these two?
Ban…
-
Hi,
I was wondering if there's option for generating bam without BQSR as DeepVariant input since DeepVariant recommends not to use bam with BQSR.
-
### In which category is your new term request?
- [X] new_definition
- [ ] existing_definition
### Preferred term label
Autosome
### Synonyms
_No response_
### Synonym type
None
### Textual de…
ccaio updated
1 month ago
-
Characterise the karyotypes present in the population at major inversions on chromosome 2.
-
Hi there!
I'm trying to load in my GFF file using the function `GFFex` but it keeps coming up with the following error:
`Error in seq.default(0, subset(karyotype, karyotype$Chr == names(list_chr…
-
Running Candida_albicans genome UCSC chrom.sizes to get the url did not yield any result to be used. How can I use this tool for a yeast genome not on ucsc browser?
-
作者您好，我在运行 python -m jcvi.graphics.karyotype seqids layout出现了这样的报错
[10/12/24 16:34:06] DEBUG Load file `layout` …
-
### In which category is your new term request?
- [ ] new_definition
- [X] existing_definition
### Preferred term label
chromosome
### Synonyms
N/A
### Textual definition
a part of the karyotyp…