-
### Reviewer's question
>The paper has generally addressed all my concerns, however **the format of the MS/MS data should be corrected.** The authors show just the experimental MS/MS data in the main…
-
Hi Vadim and team,
I have done 3 plex dimethyl labeling on samples and am now trying to analyze them following the steps outlined in the plexDIA section. But as you can see below, after finished wi…
-
First of all, I appreciate your work of creating CandyCrunch with such unmet functionalities. I'm trying CandyCrunch out on my mzML file and got this error, and would appreciate any help to overcome t…
-
Dear developers,
I am encountering an issue with peptide-shaker, which I paste here:
# ------------------------------------------------------------------
# PeptideShaker 2.2.25 Report File
#
…
-
### Basic information
* My operating system: Windows 11
* My mzmine version: 4.2.0
### What happened
I was trying to use spectral/molecular networking to group precursors based on the similari…
-
Hello. I'm trying to use PeptideShaker to process identification files obtained by SearchGUI using several search engines (Comet, OMSSA, Tide, X! Tandem and Sage).
PeptideShaker encounters the follow…
-
### Describe the question or discussion
We have a request for a new CV term for mzQC (https://github.com/HUPO-PSI/mzQC/issues/244) and it requests a TIC based on MS1 spectra only.
There is already M…
-
Currently large MS/MS datasets are handled as lists of `Spectrum` objects.
We might want to consider an own `Spectra` (or differently named) dataset class with more functionality than the simple li…
-
-
Hi HiTMaP team,
Currently I have been running through your mouse brain example data. However, I encountered an error:
## Codes I used:
```
fastafile