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The dataset types in the gEAR portal are nice and tidy:
```
mysql> select dtype, count(dtype) from dataset group by dtype;
+-----------------------+--------------+
| dtype | coun…
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# SRBCT microarray data
SBRCT gene expression data. 2318 genes, 63 training samples,
25 test samples.
One gene per row, one sample per column
Cancer classes are labelled 1,2,3,4 for c("EWS"…
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Track updates to [generate_protocol.sh](https://github.com/nasa/GeneLab_Data_Processing/blob/master/Microarray/Affymetrix/Workflow_Documentation/NF_MAAffymetrix/workflow_code/modules/POST_PROCESSING/G…
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See https://github.com/auerbachs/BMDExpress-2/wiki/Additional-Information#supported-microarrays
Current list should be:
|ID |…
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We are missing the part to get microarray designs from JSON (these are not in the _genes file). Schema seems complex according to Suhaib.
pcm32 updated
3 years ago
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Hello and congratulations with the publication.
Not sure if this is a place to ask - but I was wondering, is there a list of Illumina methylation microarray CpGs used by your PCR2 aging index? I we…
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#26
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### Context
In order to complete restoring staging deploy process the CI/CD errors need to be fixed.
### Problem or idea
```
SurveyJob 129104 failed!
F
====================================…
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I used the [data_mrna_agilent_microarray.txt](https://github.com/cBioPortal/datahub/blob/master/public/brca_metabric/data_mrna_agilent_microarray.txt) data from the portal
[brca_metabric](https://git…
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It seems that somehow MANIFESTS are not getting the cell_to_library lines written even though studies do have cell_to_library.txt files within the bundle:
```
(miniconda3)[host results]$ ls -l */*…
pcm32 updated
2 years ago