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Maybe allow OTU_table to be tall/sparse, if this is easy to implement.
If sample total read counts are currently calculated before "melting" broad/dense tables, then this may be a problem.
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Hi,
I have transposed the kraken files to the OTU table, unfortunately even though I had a lot of unidentified OTUs to the genus, it skipped them. Is it possible to perform an analysis that creates c…
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Hi There!
I was performing a dbRDA but notice that the percentage explained by the axis are different doing manually and with the microeco
I will send here the codes and the files
##### Ordin…
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Hello @ChiLiubio
Thanks for this great package!
I've just started using microeco a few days ago, but I'm encountering a problem with adding the phylo tree file to the microtable of my data.
I…
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(fastspar_env) root@LAPTOP-RCQ2QTQ1:/mnt/e/zby/JJ/fastspar# python /mnt/e/zby/jj/fastspar/fastspar.py
Running command: fastspar_bootstrap --otu_table /mnt/e/zby/jj/fastspar/fake_data.tsv --number 100…
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When running the Taqx4Fun2 makeFunctionalPredictions() command I receive an error.
Here is the code I am running (I shortened the paths):
>query_otu_seq = './table_sequences_asvNames_filtere…
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Hey there, I'm running the phyloseq_mult_raref function on a fairly small phyloseq object and it's throwing some warnings. Trying to figure out why.
```
phyloseq-class experiment-level object
otu…
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I think all the discussions under question # 45 did not address the root of the problem. Firstly, it needs to be clarified that the problem itself should be "Error in purrr:: map()"
ℹ In index: 1.
C…
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Dear MSD Team,
I have encountered a problem creating OTU Tables from Sequencing Data.
All the steps until the download of the tables have worked, however, when I finally click the download icon I ge…
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Dear all,
thanks for providing this workflow. I'm wondering if the pipeline does global clustering
on overall sequences when using wildcards in --reads option (*.fastq) ?
I have tested and i'm ge…