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# Load MetaboAnalystR
library(MetaboAnalystR)
# Clean global environment
rm(list = ls())
setwd("D:/MetaboAnalystR/PJ4")
mSet
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Hi,
I wrote a notebook a while back to use Banksy on brain spatial data (from slideseqv2_analysis.ipynb vignette). It worked without any issue, I re run it today and the only result I get is the cl…
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### Description of feature
The `--relevel `parameter in rnadeseq is primarily there for modeling in DE analysis ( i assume/recall). I just noticed that it has no influence on the ordering of the samp…
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### To Do List:
- [x] filter the fam file for only eur based on the file of `EUGEI_GROUP_EuroOnly_PCs_NonRefPanel_Dec17.txt`
- [ ] only 794 left
- [ ] the third column of the bim file (Position i…
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**Multilabel classification**
http://scikit-learn.org/stable/auto_examples/plot_multilabel.html#sphx-glr-auto-examples-plot-multilabel-py
**A demo of K-Means clustering on the handwritten digits…
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Some code for filtering, analysis, and plotting is duplicated between `src/PCA.py` and `src/plot_PCA.py`.
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Hi everyone,
I am working with a PCA constructed from trajectory analysis using the geomorph package (based on a OutCoe ). I want to replicate this to a Momocs::PCA to reconstruct shapes at custom …
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Want to use monocle2 to show the trajectory. But in the **plot_pc_variance_explained** , it showed the warning, and I can not make sure how many pc are explained. So I set the parameter **num_dim = 10…
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Good afternoon
In the function pathway_pca there are ellipses shown. What do they stand for?
Thank you,
Raquel
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**Describe the bug**
This is not a hard error, but it's an issue with the output of the analysis.
- For all the regulon markers including markers that should act in opposite directions the perturb…