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Hello, I'm a beginner in population genetic data analysis, and I don't quite understand the concept of pool sequencing. For example, I currently have BAM files for multiple populations of a species. D…
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Sequencing runs from multiple projects are becoming more commonplace. Combining prep data_frames and calculating normalized pooling volumes from combined project sequencing runs is straightforward, bu…
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Hello! I'm wondering if you would consider implementing the G statistic as in Magwene et al. 2011 (attached)? It's widely used on pool-seq data to find loci underlying trait variation in both laborato…
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Lims Issue
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For definitions of headings below see [Basic Concepts](https://atlas.scilifelab.se/infrastructure/lims/basic_concepts/).
**Work Flow:** Microbial WGS v7
**Protocol:*…
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Thanks for developing Strainy!
I'm trying to use amplicon-based Nanopore reads to figure out strain abundances in bacterial samples. The pool has 740 strains and each sample may contain ~10 of them. …
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Hello,
I am working on processing a large number of 16S sequence files generated using PacBio sequencing technology, specifically 647 and 944 files in separate runs. I am interested in using the po…
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**User story**
As a developer (Ben) I would like the new BGE pipeline to have a custom labware creator for the final blending step. This labware creator will take multiple pairs of pools: BGE Lib Poo…
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Hi!
First of all, thank you for the great tool.
I have single-cell RNA sequencing (cell-ranger) data for e.g 3 donors (=> 3 bam files, one per donor), as well as pooled scRNA-seq data for the sa…
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**Work Flow:** RNA v4
**Protocol:** Normalization of RNA samples for sequencing
**Step:** Normalization of RNA samples for sequencing
## **Description:**
_Describe the reason for the verification a…
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**User story**
As PSD we want to migrate the data held in 4 columns on the receptacle table into the relevant stored_metadata field in the requests. Then delete the unneeded columns from receptacle a…