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Hi!
Many thanks for all you development efforts!
I have six data sets that I would be interested in benchmarking with Kallisto-bustools, however I just found out that kalllisto bus only suppor…
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**Goal**
Development of a stand-alone fastq validation tool.
A flexible tool that can be applied to different single-cell technology types to check for the expected cell barcode.
It should also r…
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As mentioned by @DavidWei7 (#12) there are known issues with STRT-Seq. An ex-colleague from RIKEN has also contacted us about supporting this technique. I've suggested using the ([undocumented](https:…
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Hi
I've not been able to get a completely error free output after new installation and running your nose tests. See below for details of how I have run this and environment set-up before hand. I get…
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I have noticed inconsistent behavior in how `umi_tools extract` handles the /1 suffix depending on whether the inputs are paired end or single end. when the input is paired-end read id is changed from…
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## Preferred term label
10x multiome
## Synonyms
Chromium Single Cell Multiome ATAC + Gene Expression
## Textual definition
Simultaneous profiling of gene expression and open chromatin …
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Ran 53 tests in 0.673s
FAILED (failures=51)
a0malh01@user1$ nosetests tests/test_umi_tools.py.
I ran the following after installation of the umi-tools.
A part of the error is:
FAIL: umi_to…
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Hi, I'm trying zUMIs with the SCRB-seq example dataset. As the reference is made with an old STAR version I've download the chromosome 22 fasta from [here](https://www.ncbi.nlm.nih.gov/nuccore/NC_0000…
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hello! I have finished installed the UMItools, but there was an error when I ```$ nosetests tests/test_umi_tools.py```, the error just like this:
```
/home/fuanhua/tools/UMI-tools-master/tests/tes…
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Hi Salmon Team,
I have single-cell sequencing data generated with an approach derived from SCRB-seq approach (https://www.nature.com/articles/s41467-018-05347-6). The data looks more less like Drop…