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Hi,
I was wondering if you had any recommendations for running nextNEOpi on WGS data where one fq.gz file is over 100GB. nextNEOpi has issues with BWA, MarkDuplicates and ReadBackedPhasing. BWA can t…
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Hi,
I am currently learning to use MitoHPC to analyze WGS data. After successfully setting up the environment and testing it according to the tutorial, the script did not perform the analysis or prod…
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#### Which new datasets are being added with this release?
#### What is the sample breakdown (number of WGS, WXS, RNA-Seq, Panel, Methylation, other)?
https://d3b.atlassian.net/browse/BIXU-3767
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OGC-API Common and OGC-API EDR both are tolerant of various ways of specifying coordinate systems, leading to variations in the implementations, like:
- `crs: WGS84`
- `crs: CRS84`
- `crs: EPSG:4…
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The pipeline looks like it is optimized for processing imputed vcf data from UMICH or TOPMed imputation server which generates a DS field. Is is possible to run the pipeline on GATK WGS sequencing …
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Hi,
Thank you for developing this wonderful workflow.
I am trying to run loco-pipe workflow with 169 maize samples (BAMs). After the workflow is 47 % complete I get following error I would real…
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Calling `ST_Read_Meta('my.shp')` against a vanilla shapefile; subsequent calls to `ST_Read_Meta()` for the same or different shapefiles regularly throw a type mismatch error:
`Mismatch Type Error: …
rcoup updated
2 weeks ago
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Hi,
I am currently benchmarking tools that balance "compression and accessibility" for genotype data and encountered an issue when using XSI with large datasets. I hope you can assist me in resolvi…
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With GeoNetwork 4.2.3, I'm facing difficulties regarding one record. I don't notice this problem for all records, just this one. The problem is for integrating/linking WFS/WMS within the metadata reco…
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Hi rvalavi,
I can't understand what's going on... I am still adapting my previous script using the previous version of BlockCV, which was working correctly.
Now, last week it run the new version…