AIM-Harvard / foundation-cancer-image-biomarker

Code and evaluation repository for the paper
https://aim-harvard.github.io/foundation-cancer-image-biomarker/
MIT License
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Update docs and yaml for baselines #292

Closed surajpaib closed 3 months ago

surajpaib commented 3 months ago

Description

Related Issue

Type of Change

Checklist

Summary by CodeRabbit

coderabbitai[bot] commented 3 months ago

Walkthrough

The recent updates enhance the replication guide by providing detailed instructions for reproducing study baselines, adapting fine-tuned models for various tasks, and conducting inference with updated methodologies. These changes aim to streamline the process of model replication, adaptation, and evaluation, making it more accessible and efficient for users by offering clear, step-by-step guidance and emphasizing the use of specific configuration notes and YAML files.

Changes

File Path Change Summary
.../replication-guide/baselines.md Expanded instructions for reproducing baselines with YAML configurations and training commands.
.../replication-guide/fm_adaptation.md Updated adaptation instructions, emphasizing 'Note: comments for task-specific configurations.
.../replication-guide/inference.md Revised feature extraction and prediction instructions, with emphasis on YAML file usage for model testing.

🐇✨
To the world of code, we hop and leap,
With every update, a promise we keep.
Through baselines and models, we guide your way,
In YAML and comments, our wisdom we lay.
🌟 Here's to changes, both big and small,
May they make your coding journey a ball!
🐰💻

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