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AMP-SCZ / lochness

Download your data to a data lake.
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Lochness update to accommodate the new Penn CNB REDCap structure #124

Open kcho opened 1 year ago

kcho commented 1 year ago

The main change in the new Penn CNB REDCap is the new field name that contains AMP-SCZ IDs. (src_subject_id, which was session_subid in the previous CNB REDCap) This PR updates the field name.

Note that this PR will change the structure of UPENN JSON files, thus all downstream pipelines depending on the previous json structure need to be updated. An example of the new JSON file is located on ERIS:

/data/predict1/home/kcho/tmp/upenn_new_format/test_one_subject.json

(Deploying this PR will make the lochness instance to overwrite all existing UPENN JSON files.)

kcho commented 1 year ago

Thanks. I'll merge this PR and deploy it on Pronet server, once DPACC team agrees to move to the new PennCNB format.