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ARTbio / GalaxyKickStart

Ansible playbooks for Galaxy Server deployment
GNU General Public License v3.0
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metavisitor-2 worflows 1-1, 1-2 and 1-3 #301

Closed drosofff closed 5 years ago

drosofff commented 6 years ago

@ccedmendoza there is a slight "bug" in the new workflows: at the blastn alignment step, the parameter "maximum hit to report by alignment should be set at 5 instead of 0". Othewise, this causes the report of many more hits and the run time of cap3 to reassemble the hits increases dramatically (X 10).

By the way, I even think that this maximum value of 5 could be set to 1, if it is confirmed that this is the best hit for an alignment that is reported. but this probably would require extensive testing. In any case the max value of 5 for metavisitor 1-2 has always looked arbitrary, without clear rational

drosofff commented 5 years ago

@ccedmendoza shall we close this issue ?

ccedmendoza commented 5 years ago

Yes I think it can be closed