CellAssign training parameter updates

ASAP-CRN / pmdbs-sc-rnaseq-wf

Repo for testing and developing a common postmortem-derived brain sequencing (PMDBS) workflow harmonized across ASAP

Apache License 2.0

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Closed ergonyc closed 2 weeks ago

ergonyc commented 1 month ago

Current CellAssign parameters are not ideal.

Bug in how "size_factor" is calculated. (needs to be calculated on ALL genes, not just markers)
training hyperparameter update.