ASAP-CRN / pmdbs-sc-rnaseq-wf

Repo for testing and developing a common postmortem-derived brain sequencing (PMDBS) workflow harmonized across ASAP
Apache License 2.0
1 stars 1 forks source link

scRNAseq "flavors", technology and sc vs sn #64

Open ergonyc opened 1 month ago

ergonyc commented 1 month ago

The filtering parameters are currently fixed for all sample types. It has been raised by the QC working group that single-cell and single-nucleus, and different sequencing technologies produce different distributions of reads/counts and should have different cutoffs.

Its unclear where / how to impliment this. The full metadata tables should have complete context (STUDY tables)