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Abe404
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root_painter
RootPainter: Deep Learning Segmentation of Biological Images with Corrective Annotation
https://nph.onlinelibrary.wiley.com/doi/full/10.1111/nph.18387
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Add functionality to assign corrections to segmentations
#83
rohanorton
closed
1 year ago
0
pre-segment should be more obvious
#82
Abe404
opened
1 year ago
0
keyboard shortcuts should be more discoverable
#81
Abe404
opened
1 year ago
1
"0 out of 40 of max 60 epochs without progress" is confusing.
#80
Abe404
opened
1 year ago
0
Initial interactive training with clear examples is too difficult
#79
Abe404
opened
1 year ago
0
pay apple so i can have a simpler install process for the mac client
#78
Abe404
opened
1 year ago
0
painter readme is out of date
#77
Abe404
opened
1 year ago
2
Bump torch from 1.12.1 to 1.13.1 in /trainer
#76
dependabot[bot]
closed
1 year ago
0
instructions folder empty
#75
jmicciulla
closed
1 year ago
3
Segment folder command line option for server/trainer
#74
Abe404
opened
1 year ago
0
Bump setuptools from 60.5.0 to 65.5.1 in /painter
#73
dependabot[bot]
closed
1 year ago
0
images missing in metrics plot
#72
Abe404
closed
1 year ago
1
Bump pillow from 9.0.1 to 9.3.0
#71
dependabot[bot]
closed
1 year ago
0
Bump pillow from 9.0.1 to 9.3.0 in /painter
#70
dependabot[bot]
closed
1 year ago
0
Bump pillow from 9.0.1 to 9.3.0 in /trainer
#69
dependabot[bot]
closed
1 year ago
0
Show informative error message when dataset not found.
#68
Abe404
closed
1 year ago
3
mask images
#66
Abe404
closed
1 year ago
2
Should be possible to specify nested project dataset
#65
Abe404
closed
1 year ago
2
open project files with RootPainter
#64
Abe404
opened
1 year ago
0
select source image directory for project should default to sync_dir
#63
Abe404
closed
1 year ago
2
Expand tutorial to include segmentation of original dataset and extraction of traits
#62
Abe404
opened
1 year ago
1
Sync is too slow in the colab tutorial
#61
Abe404
opened
1 year ago
3
Image skip to start/to end/to index function
#59
geezacoleman
closed
1 year ago
4
Could not find a backend to open image
#57
big-charles
closed
1 year ago
1
Width/Heigth mismatch
#56
big-charles
closed
1 year ago
2
local server gui
#54
Abe404
opened
1 year ago
0
lung tutorial is too difficult
#53
Abe404
opened
1 year ago
0
minimum dataset image size warning
#52
Abe404
opened
1 year ago
0
Could not load plugin xcb
#51
Abe404
closed
1 year ago
0
segmentation RVE option
#50
Abe404
closed
1 year ago
1
Output probabilities
#49
Abe404
closed
1 year ago
2
Version number specified in multiple places
#48
Abe404
opened
2 years ago
0
45 windows build failing actions
#47
Abe404
closed
2 years ago
0
45 windows build failing actions
#46
Abe404
closed
2 years ago
0
windows build failing (on github CI/Actions)
#45
Abe404
closed
2 years ago
0
time remaining
#44
Abe404
closed
2 years ago
0
export options not showing on metrics plot
#43
Abe404
opened
2 years ago
1
Display time remaining for segmentation/extracting length
#42
nesod1
closed
1 year ago
4
ubuntu (20) Qt platform plugin could be initialized.
#41
Abe404
closed
2 years ago
3
ubuntu installer
#40
Abe404
closed
2 years ago
2
Bump numpy from 1.21 to 1.22.0 in /trainer
#39
dependabot[bot]
closed
2 years ago
0
Create dataset should try to complete even if it fails for some images
#38
Abe404
closed
2 years ago
1
Bump pillow from 8.2.0 to 9.0.1 in /painter
#37
dependabot[bot]
closed
2 years ago
1
Bump pillow from 8.2.0 to 9.0.1 in /trainer
#36
dependabot[bot]
closed
2 years ago
0
squares cut out of predicted region
#35
geezacoleman
closed
2 years ago
6
create dataset with small images can cause crash
#34
Abe404
closed
1 year ago
2
extract count is broken in the latest release!
#33
Abe404
closed
2 years ago
2
Bump numpy from 1.18.4 to 1.21.0 in /painter
#32
dependabot[bot]
closed
2 years ago
1
Bump numpy from 1.18.0 to 1.21.0 in /trainer
#31
dependabot[bot]
closed
2 years ago
1
Bump pillow from 8.2.0 to 9.0.0 in /trainer
#30
dependabot[bot]
closed
2 years ago
1
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