issues
search
AdmiralenOla
/
Scoary
Pan-genome wide association studies
GNU General Public License v3.0
145
stars
34
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Migrate to SciPy 1.12.0.
#110
emollier
opened
1 month ago
0
missing data in genotype file
#109
snackens
opened
11 months ago
0
Significance of the worst_pairwise_p
#108
plasmid02
opened
1 year ago
3
UnicodeDecode Error while reading traits file
#107
arijitnus
opened
1 year ago
0
fix ValueError: invalid mode: 'rU' with python3.11
#106
emollier
opened
1 year ago
1
Unrecognized character found in trait file
#105
shaodongyan
opened
1 year ago
2
Should assemblies be removed if core gene alignment shows redundancies?
#104
chahatupreti
opened
1 year ago
0
Stop at "Calculating max number of contrasting pairs for each nominally significant gene: in the Ternimal
#103
Xiangyang1984
opened
1 year ago
0
How to generate manhatton plot from Scoary results
#102
sekhwal
closed
1 year ago
1
genetic differences among populations defined by population analysis
#101
kopelol
closed
1 year ago
2
How can I explore the differences between subpopulations defined using population analysis?
#100
kopelol
closed
2 years ago
0
Large number of significant genes
#99
LeonardosMageiros
closed
2 years ago
1
Convert vcf from parsnp to Scoary input
#98
nicola-palmieri
opened
2 years ago
0
Startcol error
#97
GillNdhlovu
opened
2 years ago
1
Support for non-binary traits
#96
MrTomRod
opened
2 years ago
9
collapse flag output
#95
jayvorn
opened
2 years ago
0
Question about --collapse
#94
Antonia-Chalka
opened
2 years ago
2
I got the CSV files of all trait related genes. How do I get the important genes in all trait files?
#93
971202
opened
3 years ago
0
/var/spool/gridengine/execd/cu17/job_scripts/371921: line 11: 9884 Killed
#92
971202
closed
2 years ago
1
Gene enrichments across host sites
#91
spatz018
opened
3 years ago
0
IndexError: list index out of range
#90
hollygene
opened
3 years ago
4
_csv.Error: field larger than field limit (131072)
#89
ga23981
opened
3 years ago
0
Scoary output for phandango
#88
pavlo888
opened
3 years ago
1
Separate trait files
#87
zakisaati
closed
2 years ago
1
gene_presence_absence.csv file from Roary
#86
haruosuz
closed
3 years ago
1
Self created absence_presence file as input?
#85
maesaar
closed
3 years ago
2
Missing genes in results
#84
jimmyliu1326
closed
3 years ago
1
Scoary run in cluster MPI???
#83
germant13
opened
4 years ago
1
How to filter Scoary Results
#82
noahaus
closed
3 years ago
2
Empty output files with k-mer GWAS
#81
npavlovikj
closed
3 years ago
1
Scoary not accepting my traits.csv
#80
bkm23644
closed
4 years ago
1
Splitting paralogs influence to Scoary?
#79
nbawe
closed
4 years ago
2
Piggy output as input to use with Scoary?
#78
maesaar
closed
3 years ago
3
error
#77
darwinbandoy
closed
4 years ago
9
VCF GWAS
#76
ahmedmagds
closed
3 years ago
2
Add functionality to handle missing values in the genetic data
#75
AdmiralenOla
opened
5 years ago
0
Please switch to Python3
#74
tillea
opened
5 years ago
0
Test data are missing so test suite does not succeed
#73
tillea
opened
5 years ago
0
Don't crash when newick file has node labels
#72
AdmiralenOla
opened
5 years ago
2
Segentation fault
#71
giggzie02
closed
5 years ago
1
How to output information concerning all genes ?
#70
mylanhong
closed
5 years ago
1
RuntimeError: maximum recursion depth exceeded while calling a Python object
#69
mlaziz
opened
5 years ago
4
GenomeIDs not matching custom tree and gene pres/abs
#68
moorembioinfo
closed
5 years ago
2
Not all genes are reported with "-p 1.0"
#67
IEkAdN
closed
5 years ago
2
Incomplete presence/absence data from Single-cell genomes
#66
thackl
opened
6 years ago
3
SNP gwas
#65
samlipworth
closed
6 years ago
2
Genomic associations between subspecies
#64
karchern
closed
6 years ago
4
Changes to vcf2scoary
#63
AdmiralenOla
closed
6 years ago
0
1.6.15
#62
AdmiralenOla
closed
6 years ago
0
1.6.14
#61
AdmiralenOla
closed
7 years ago
0
Next