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AgBase / InterProScan

Code for building InterProScan docker container and supporting scripts
https://agbase-docs.readthedocs.io/en/latest/interproscan/intro.html
Creative Commons Zero v1.0 Universal
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Why is /data/ needed before input and output file/dir? #2

Closed suryasaha closed 4 years ago

suryasaha commented 4 years ago

Breaks all post processing.

suryasaha commented 4 years ago

Path errors if /data/ used before output dir

find: './/data/def-test-2': No such file or directory
find: './/data/def-test-2': No such file or directory
head: cannot open './/data/def-test-2/query.0.xml' for reading: No such file or directory
find: './/data/def-test-2': No such file or directory
find: './/data/def-test-2': No such file or directory
head: cannot open './/data/def-test-2/query.0.gff3' for reading: No such file or directory
find: './/data/def-test-2': No such file or directory
find: './/data/def-test-2': No such file or directory
find: './/data/def-test-2': No such file or directory
find: './/data/def-test-2': No such file or directory
suryasaha commented 4 years ago

Due to cyverse friendly paths