velvet & megahit need to take in bbmap reads

AlexanderLabWHOI / eukrhythmic

A metatranscriptomic pipeline optimized for the study of microeukaryotes.

MIT License

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velvet & megahit need to take in bbmap reads #2

Closed akrinos closed 4 years ago

akrinos commented 4 years ago

Check what workflow is...should bbmap operate before trimming happens? in which case everything still pulls from trimmomatic output. Otherwise all need to have Trinity-esque infrastructure

akrinos commented 4 years ago

Verified that bbmap should happen after Trinity, which is done