Open cnatalie opened 3 years ago
rule run_hmmer in annotate-snake should use the transdecoder .pep output as the fasta_file input instead of the mmseq-clustered nucleotide assembly, because the 6 frame translation is way too slow and does not predict proteins well(!!)
rule run_hmmer
fasta_file
rule run_hmmerin annotate-snake should use the transdecoder .pep output as thefasta_fileinput instead of the mmseq-clustered nucleotide assembly, because the 6 frame translation is way too slow and does not predict proteins well(!!)