issues
search
AlexanderLabWHOI
/
eukrhythmic
A metatranscriptomic pipeline optimized for the study of microeukaryotes.
MIT License
15
stars
3
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Adapter fix
#29
halexand
closed
4 years ago
0
Check the threads parameter in Trinity?
#28
halexand
closed
4 years ago
1
Tweaks to README and adding k-mer selection to velvet
#27
akrinos
closed
4 years ago
0
Adding many new features
#26
akrinos
closed
4 years ago
0
Trinity running way too slow and only running 2 simultaneous instances
#25
akrinos
closed
4 years ago
0
Adding more command line entries for slurm control
#24
akrinos
opened
4 years ago
0
Adding centralization of preamble variable loading steps
#23
akrinos
closed
4 years ago
0
Picking up after failed assembly jobs?
#22
halexand
closed
4 years ago
2
Merge changes related to multiqc & sample file creation
#21
akrinos
closed
4 years ago
0
prefixes flag in transabyss-merge
#20
cnatalie
closed
4 years ago
1
add metavelvet to velvet-snake
#19
cnatalie
closed
4 years ago
1
Add bbmap toggle to the slamon rule
#18
halexand
closed
4 years ago
1
User parameters?
#17
halexand
closed
1 year ago
2
Add a hard clean up?
#16
halexand
closed
4 years ago
1
Add MultiQC
#15
halexand
closed
4 years ago
2
Subset the requirement and testing in Snakefile to separate scripts
#14
halexand
closed
4 years ago
1
Make a small demo dataset to include as `test`
#13
halexand
closed
4 years ago
1
Update scripts to enable the sample file creation with new naming scheme
#12
halexand
closed
4 years ago
1
Cleanup and extensibility
#11
akrinos
closed
4 years ago
0
Optimizing the automated pairing of forward and reverse reads
#10
halexand
closed
4 years ago
3
If you run `dropspike` with no spike to drop bbmap does weird things
#9
halexand
closed
4 years ago
1
Program versioning?
#8
halexand
opened
4 years ago
0
HA cleanup etc.
#7
halexand
closed
4 years ago
1
Check for hard coding?
#6
halexand
closed
4 years ago
3
General cleanup
#5
halexand
closed
4 years ago
8
Conda environments for individual modules / rules
#4
halexand
closed
4 years ago
3
Merge new features into master branch
#3
akrinos
closed
4 years ago
0
velvet & megahit need to take in bbmap reads
#2
akrinos
closed
4 years ago
1
Make sure duplicate Trinity headers aren't a problem
#1
akrinos
closed
4 years ago
1
Previous