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AlexsLemonade / scpcaTools

BSD 3-Clause "New" or "Revised" License
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Support compression in `sce_to_anndata()` #244

Closed jashapiro closed 11 months ago

jashapiro commented 11 months ago

Is your feature request related to a problem? Please describe.

We currently write out AnnData files without any compression. We should pass arguments for compression to zellkonverter::writeH5AD()

Describe the solution you'd like

We can add a ... to the call that passes any additional arguments down to zellkonverter::writeH5AD

Describe alternatives you've considered

We could add a add a compression argument that we pass directly to the compression argument, rather than the catchall, but I like the fact that this gives us free support for other writeH5AD() options.

jashapiro commented 11 months ago

We should also allow .h5ad as a file extension for this function, since that seems to be the standard.