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AllenInstitute / AllenSDK

code for reading and processing Allen Institute for Brain Science data
https://allensdk.readthedocs.io/en/latest/
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updates to behavior ophys NWB #1393

Open wbwakeman opened 4 years ago

wbwakeman commented 4 years ago

Use updated version of PyNWB in AllenSDK rerun NWB files using the new lick source Add eye tracking (#1391) refactoring will also be necessary e.g. using "nwb extension" builder instead of hand-writing yaml extension files.

pickles-bread-and-butter commented 4 years ago

I'm putting this back in the backlog until I'm done with the FAQ for the segmentation labeling app Here are my current notes,

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This covers the general process and the next step is to go into the BehaviorOphysNwbApi and understand it's baser functionality, picking points for code injection in the appropriate places.

pickles-bread-and-butter commented 4 years ago

I'm breaking this down into smaller tickets to better address each point

wbwakeman commented 4 years ago

I think Nick's comment was intended for a different issue. The "Update with examples of accessing neuropixels probe CCF coordinates" item has no bearing here. That is for neuropixels (extracellular electrophysiology) and this issue is for optical physiology. So, one less thing to do :-)

pickles-bread-and-butter commented 4 years ago

Awesome I made a ticket for it but I'll just close that and tag it with 'wont fix'. This ticket has been broken down into the relevant parts in case we want to split the work between developers. Split off into: #1597 #1598 #1600 #1601