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AllenInstitute
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abc_atlas_access
Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas
https://alleninstitute.github.io/abc_atlas_access/
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Adding aging mouse dataset
#65
morriscb
opened
1 week ago
0
Aging Mouse notebooks
#64
morriscb
opened
2 weeks ago
0
Rc/0.3.0
#63
morriscb
closed
3 weeks ago
0
Add abc_sample_id to cell_metadata.
#62
morriscb
closed
3 weeks ago
0
Add support for new abc_sample_id column.
#61
morriscb
closed
3 weeks ago
0
Fixup link.
#60
morriscb
closed
2 months ago
0
Add missing imputed merfish link.
#59
morriscb
closed
2 months ago
0
How do I download specific cell type gene expression data for WHB?
#58
ayeTown
closed
2 months ago
1
'Sample Id' of selected cells in MERFISH datasets in the online viewer don't match cell labels in h5ad data
#57
paulacauhy
closed
3 weeks ago
2
Simplify cache creation
#56
morriscb
closed
3 months ago
0
Create manifest creation script.
#55
morriscb
closed
3 months ago
1
Add imputed notebook
#54
morriscb
closed
3 months ago
5
Release MERFISH imputed gene data.
#53
morriscb
closed
3 weeks ago
0
Rc/0.2.0
#52
morriscb
closed
3 months ago
0
Add github actions testing.
#51
morriscb
closed
4 months ago
0
Update notebooks.
#50
morriscb
closed
4 months ago
0
Create script to run gene selection from expression matrices for running on CodeOcean.
#49
morriscb
closed
4 months ago
0
Debug cache object for s3fs usage.
#48
morriscb
closed
4 months ago
0
Rc/0.1.0
#47
morriscb
closed
5 months ago
0
Finish up AbcProjectCache testing.
#46
morriscb
opened
8 months ago
0
Add new cache object and upate notebooks/webpage for WHB release.
#45
morriscb
closed
8 months ago
0
U/morriscb/update jupyter book
#44
jeremymiller
closed
8 months ago
0
Create testing for abc_atlas_cache objects
#43
morriscb
closed
4 months ago
1
Questions about registering spatial transcriptome data with CCF
#42
Super-LzzZ
opened
9 months ago
1
parcellation boundary overlay
#41
KatMedMed
opened
9 months ago
1
Issue on page /intro.html
#40
stefanonard85
opened
9 months ago
2
single transcript coordinates file/ cannot find it on AWS
#39
stefanonard85
opened
9 months ago
0
Modify jupyter book pages and notebooks.
#38
morriscb
closed
8 months ago
0
Create user facing cache object
#37
morriscb
closed
9 months ago
7
Create initial S3 cache objects
#36
morriscb
closed
10 months ago
4
Create Manifest and FileAttributes class
#35
morriscb
closed
10 months ago
0
Create cache object for ABC Atlas
#34
morriscb
closed
8 months ago
0
Issue on page /notebooks/getting_started.html
#33
jackwalleninstituteorg
opened
1 year ago
0
update data and notebooks to reflect minor WMB updates
#32
lydiang
closed
11 months ago
1
TileDB notebooks
#31
neurovium
opened
1 year ago
0
Include release notes / change log
#30
tmchartrand
opened
1 year ago
1
adding comments about the data download and notebooks execution
#29
djarecka
opened
1 year ago
0
Mismatch between cell metadata and expression matrix
#28
rwollman
opened
1 year ago
3
Puja/pr/230912
#27
danielsf
closed
1 year ago
1
Most updated PR (09/12/23) (using puja/pr/230912)
#26
puja-trivedi
closed
1 year ago
0
modifed WMB taxonomy descriptions
#25
lydiang
closed
1 year ago
0
zhuang datafix
#24
lydiang
closed
1 year ago
0
rename description files for Zhuang merfish data
#23
lydiang
closed
1 year ago
0
Lydian/zhuangfix/20230911
#22
lydiang
closed
1 year ago
0
Auto-generate "resource page" html files
#21
puja-trivedi
opened
1 year ago
0
Abstract away data access
#20
puja-trivedi
opened
1 year ago
0
Missing division information from terms / pivot table
#19
rwollman
opened
1 year ago
1
Zhuang lab readme update
#18
xingjiepan
closed
1 year ago
0
no data to run 10x_snRNASeq_tutorial_part_2a
#17
djarecka
opened
1 year ago
0
Lydian/merfish/20230825
#16
lydiang
closed
1 year ago
0
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