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AllenInstitute / bmtk

Brain Modeling Toolkit
https://alleninstitute.github.io/bmtk/
BSD 3-Clause "New" or "Revised" License
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Cannot rebuild network for V1 models #380

Open lyuyinyang opened 4 months ago

lyuyinyang commented 4 months ago

When I tried to rebuild the network for V1 biophysical model using code $ mpirun -np 2 python build_network.py, the following output is generated:

206 [WARNING] Adjusted calculated probability based on distance dependence is coming out to be greater than 1 for LIFi5Sst and LIFi5Pvalb. Setting to 1.0
208 [WARNING] Adjusted calculated probability based on distance dependence is coming out to be greater than 1 for i4Sst and i4Pvalb. Setting to 1.0
208 [WARNING] Adjusted calculated probability based on distance dependence is coming out to be greater than 1 for i4Sst and i4Pvalb. Setting to 1.0
212 [WARNING] Adjusted calculated probability based on distance dependence is coming out to be greater than 1 for LIFi4Sst and i4Pvalb. Setting to 1.0
212 [WARNING] Adjusted calculated probability based on distance dependence is coming out to be greater than 1 for LIFi4Sst and i4Pvalb. Setting to 1.0

Primary job  terminated normally, but 1 process returned
a non-zero exit code. Per user-direction, the job has been aborted.

mpirun noticed that process rank 182 with PID 40197 on node node15 exited on signal 9 (Killed).

How can I solve the problem of "calculated probability is coming out to be greater than 1"?

lyuyinyang commented 4 months ago

Also, how can the issue be solved "job has been aborted"?