Closed bjhardcastle closed 7 months ago
Hi @bjhardcastle
This is due to the fact that there are too many bad channels and the preprocessing is not producing any output files. Nextflow doesn't like this.
I'll fix it soon by creating a mock output file in case this happens :)
This should be fixed with these commits to the preprocessing + sorting capsule:
Basically, the problem was that each step of the pipeline is expected to produce an output. In this case, with too many bad channels, some dummy outputs are now produced (and will be ignored later). Testing the failing job now after the fix
@bjhardcastle closing this because it's been taken care of :)
Run 8927683:
Run 8797934: