Annotation : [ERROR] [Something went wrong when trying to extract data from your genbank file: 'product']

[Ads98]

Annotation command seems to be having issues reading in the product field from the GenBank file.

_snptoolkit annotate -i vcf -g GCF_000001405.25_GRCh37.p13genomic.gbff [ERROR] [Something went wrong when trying to extract data from your genbank file: 'product']

This is what the data looks like inside the file Cat GCF_000001405.25_GRCh37.p13_genomic.gbff |grep product

/product="small ubiquitin-related modifier 1 isoform e" /product="small ubiquitin-related modifier 1 isoform a /product="small ubiquitin-related modifier 1 isoform a /product="small ubiquitin-related modifier 1 isoform c" /product="NOP58 ribonucleoprotein" /product="nucleolar protein 58" /product="small nucleolar RNA, C/D box 70" /product="small nucleolar RNA, C/D box 70B" /product="small nucleolar RNA, C/D box 11B" /product="small nucleolar RNA, C/D box 11" /product="bone morphogenetic protein receptor type 2" /product="bone morphogenetic protein receptor type-2 /product="family with sequence similarity 117 member B" /product="protein FAM117B" /product="islet cell autoant The log provides no more information than that unfortunately Would be grateful for any help

[Amine-Namouchi]

Hi there, from what I see you have for some lines a '"' missing like here /product="small ubiquitin-related modifier 1 isoform a

at the end of the line you expect a " but its not there. Is your gbff from genbank?