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AmpliconSuite
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AmpliconSuite-pipeline
A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect. Previously called PrepareAA.
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Always stuck at "Plotting SV View"
#17
notchw
closed
2 years ago
6
TypeError: 'NoneType' object is not callable
#16
zhangheng43
closed
2 years ago
16
Code for parsing a _cycles.txt file from AA and formatting as .bedpe
#15
auberginekenobi
closed
3 years ago
0
Parameter for cnvkit in Readme need change
#14
Si-Nan
closed
3 years ago
1
run_paa_script.sh in Docker has permission problem to write
#13
Si-Nan
closed
3 years ago
1
[AmpliconArchitect] MD tag not present
#12
zhang919
closed
3 years ago
8
some question about PrepareAA
#11
zhang919
closed
3 years ago
8
Update Docker build to include CNVkit
#10
auberginekenobi
closed
4 years ago
0
ZeroDivisionError when finding amplified intervals
#9
auberginekenobi
closed
4 years ago
2
coverage.stats file does not exist?
#8
alhafidzhamdan
closed
4 years ago
3
amplified_intervals.py: error: unrecognized arguments: --ref GRCh38
#7
zhang919
closed
4 years ago
12
How to interpret results like "Segments=0+,12+,0-"?
#6
kerenzhou062
opened
4 years ago
6
Software dependencies in README
#5
auberginekenobi
closed
1 year ago
1
How to interpret results like "Segments=13+,83-,105+,139-,0-,0+"?
#4
kerenzhou062
opened
4 years ago
1
data_repo for GRCh38
#3
kerenzhou062
closed
4 years ago
1
Are the coordinates in *_cycles.txt in 1-based format?
#2
kerenzhou062
closed
3 years ago
8
How can I identify ecDNAs from PrepareAA results?
#1
kerenzhou062
closed
3 years ago
10
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