This is not a bug, just a question that I haven't been able to figure out yet:
what are the values in "Sequential_Transformation_input_2.txt" (and the matching figure) based on?
The values in Sequential_Transformation_input_1, I can link to the FunctionHit tab in the METABOLIC_result.xlsx file (summing the # of genomes for which that specific function is present). But I can't find anything in METABOLIC_result.xlsx linking to oligosaccharide-degradation, cellobiose etc.
In addition, I have a dataset with only genomes (no raw reads), so I would like to run METABOLIC-G. METABOLIC-G does not output the number of genomes for sequential transformation input 1 and 2, but I assume I should be able to calculate this?
Hello,
This is not a bug, just a question that I haven't been able to figure out yet: what are the values in "Sequential_Transformation_input_2.txt" (and the matching figure) based on?
The values in Sequential_Transformation_input_1, I can link to the FunctionHit tab in the METABOLIC_result.xlsx file (summing the # of genomes for which that specific function is present). But I can't find anything in METABOLIC_result.xlsx linking to oligosaccharide-degradation, cellobiose etc.
In addition, I have a dataset with only genomes (no raw reads), so I would like to run METABOLIC-G. METABOLIC-G does not output the number of genomes for sequential transformation input 1 and 2, but I assume I should be able to calculate this?
Thank you in advance, Best regards, Luna