WHY only 1 CPU when hmmsearch

AnantharamanLab / METABOLIC

A scalable high-throughput metabolic and biogeochemical functional trait profiler

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WHY only 1 CPU when hmmsearch #182

Open PonderLi opened 8 months ago

PonderLi commented 8 months ago

Hi, thanks for so helpful tools! I noticed that when using hmmsearch, the "--cpu" is always 1, could I increase it to speed up the analysis?

snpone commented 3 months ago

no, you can't. Cause %result_hmm only dealing ko's and store the results one by one. In fact, the other step hmmsearch can run multi-threads. So don't worry, just be patient.