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ArcanaFramework / arcana

Abstraction of Repository Centric ANAlysis
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Debugged various issues that were raised by running on production #89

Closed tclose closed 2 years ago

tclose commented 2 years ago

This PR includes an assortment of bug-fixes and minor tweaks (e.g. to logging output and run-arcana-pipeline options) to get BIDS apps running on the production server

codecov-commenter commented 2 years ago

Codecov Report

Merging #89 (ec0610a) into main (5646989) will increase coverage by 0.19%. The diff coverage is 80.43%.

@@            Coverage Diff             @@
##             main      #89      +/-   ##
==========================================
+ Coverage   72.74%   72.94%   +0.19%     
==========================================
  Files          52       52              
  Lines        4807     4905      +98     
  Branches      951      974      +23     
==========================================
+ Hits         3497     3578      +81     
- Misses       1080     1087       +7     
- Partials      230      240      +10
Impacted Files Coverage Δ
arcana/__about__.py 100.00% <ø> (ø)
arcana/test/fixtures/bids.py 100.00% <ø> (ø)
arcana/test/fixtures/common.py 88.13% <ø> (ø)
arcana/cli/deploy.py 60.25% <61.70%> (-1.32%) :arrow_down:
arcana/core/utils.py 76.61% <87.50%> (+0.43%) :arrow_up:
arcana/tasks/bids/app.py 81.50% <88.88%> (+1.20%) :arrow_up:
arcana/core/data/column.py 85.29% <89.47%> (+10.00%) :arrow_up:
arcana/core/pipeline.py 80.00% <100.00%> (+0.61%) :arrow_up:
arcana/data/stores/bids/dataset.py 70.14% <100.00%> (ø)
arcana/data/stores/bids/structure.py 61.53% <100.00%> (-0.37%) :arrow_down:
... and 4 more

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