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ArcanaFramework
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arcana
Abstraction of Repository Centric ANAlysis
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install mrconvert in test GH action
#132
tclose
closed
2 years ago
1
Adds commands to perform auto-update of XNAT container service images
#131
tclose
closed
2 years ago
1
[STORY] Clean up spefications of analysis classes
#130
tclose
closed
2 years ago
0
Rework pipeline autodocs based on feedback #120
#129
Prepultrue
closed
2 years ago
3
[STORY] Add converter arg to dcm2niix to enable 3D -> 4D conversion
#128
tclose
closed
2 years ago
1
[WIP] Implements more unittests for analysis module and activated validators globally
#127
tclose
closed
2 years ago
1
Touch up analysis classes
#126
tclose
closed
2 years ago
1
Analysis classes
#125
tclose
closed
2 years ago
1
[STORY] Provide execution context to pipeline builders
#124
tclose
opened
2 years ago
0
[STORY] Access software license files stored in data repository
#123
tclose
closed
1 year ago
1
[STORY] Investigate mypy for linting/static type checking
#122
Prepultrue
closed
1 year ago
0
[STORY] Add "Why Arcana" section to docs
#121
tclose
opened
2 years ago
0
[STORY] Rework pipeline autodocs based on feedback
#120
tclose
closed
2 years ago
1
Analysis classes
#119
tclose
closed
2 years ago
0
Bug fix for alternative location of vcs information in direct_url.json
#118
Mahdieh-dst
closed
2 years ago
1
Ran Black and Codespell over code-base
#117
tclose
closed
2 years ago
1
[STORY] Cache docker and DICOM datasets between test runs
#116
tclose
opened
2 years ago
2
Removed sample DICOM datasets
#115
tclose
closed
2 years ago
1
Debugging deployment framework
#114
tclose
closed
2 years ago
1
[STORY] Add unittests to cover data access and format handling methods
#113
tclose
opened
2 years ago
0
[STORY] Add unittests to cover core Arcana package
#112
tclose
opened
2 years ago
0
Dcm2niix extract volume and arbitrary suffixes
#111
tclose
closed
2 years ago
1
[STORY] Bulk reformat project with Black
#110
tclose
closed
2 years ago
0
[STORY] Write `shell_cmd` task that can be initiated by build YAML
#109
tclose
closed
2 years ago
1
[STORY] Save data stores in separate YAML files
#108
tclose
opened
2 years ago
0
Add tests for building docs from pipeline specs #91
#107
Prepultrue
closed
2 years ago
1
Reworked description of data model in docs
#106
tclose
closed
2 years ago
1
[STORY] Security screen pipeline inputs for special characters
#105
tclose
opened
2 years ago
0
[STORY] Document "JSON edit" (JQ expression) syntax when working with BIDS datasets/apps
#104
tclose
opened
2 years ago
0
added 'json_edits' kwarg to bids_app
#103
tclose
closed
2 years ago
1
Be able to access paths of neighbouring files when editing json files in BIDS datasets
#102
tclose
closed
2 years ago
1
[BUG] Arcana dependencies that need to be installed from GitHub/Lab are missing 'git+' qualifier
#101
tclose
closed
2 years ago
1
[STORY] Clean up logging from run-arcana-pipeline
#100
tclose
opened
2 years ago
0
[STORY] Store provenance data in derivatives datatype
#99
tclose
opened
2 years ago
0
[STORY] Compare spec used to build previously built images during deployment
#98
tclose
closed
2 years ago
2
[STORY] Select linter and clean up errors
#97
tclose
closed
2 years ago
1
[STORY] Pre-commit auto-formatting with black package
#96
tclose
closed
2 years ago
0
[STORY] Store field maps in Bids datasets
#95
tclose
closed
2 years ago
0
Implemented being able to pass data rows to pipelines
#94
tclose
closed
2 years ago
1
Data rows
#93
tclose
closed
2 years ago
1
Use jq.py to edit JSON files
#92
Prepultrue
closed
2 years ago
2
[STORY] Add unittest to cover doc generation
#91
tclose
closed
2 years ago
4
Implementation of GH continuous deployment
#90
tclose
closed
2 years ago
1
Debugged various issues that were raised by running on production
#89
tclose
closed
2 years ago
1
[STORY] Standardise names of CLI options and help formatting
#88
tclose
closed
2 years ago
2
rename 'workflow' to 'pydra_task' in pipeline specs
#87
tclose
closed
2 years ago
1
pipeline docs
#86
Prepultrue
closed
2 years ago
1
Debugs issues found in production runs
#85
tclose
closed
2 years ago
0
[STORY] Enable deployed pipelines to access whole data rows instead of specific columns
#84
tclose
closed
2 years ago
2
Rename DataNode to DataRow
#83
tclose
closed
2 years ago
1
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