search

BDI-pathogens / phyloscanner

Phylogenetics between and within hosts at once, all along the genome.
GNU General Public License v3.0
44 stars 14 forks source link

add functions #61

Closed XiaoyueXI closed 2 years ago

mdhall272 commented 3 years ago

Hi @XiaoyueXI - could you make a couple of tweaks?

Am I right in thinking "Needed if allowMultiTrans" is incorrect, since there is a default?

And if n.mt is allowed to be noninteger, could you split this into a raw count and a proportion and have separate documented options?

XiaoyueXI commented 3 years ago

Hi @mdhall272, I have added p.mt args and fix the documented options. Please let me know if there are any other issues. Thank you!

XiaoyueXI commented 2 years ago

Hi @mdhall272, I think the ordev2 branch is ready to use. Would it be possible to accept the pull request? Thank you!