search

BDI-pathogens / phyloscanner

Phylogenetics between and within hosts at once, all along the genome.
GNU General Public License v3.0
44 stars 14 forks source link

phyloscanner.analyse.trees.R #68

Closed amcasto closed 7 months ago

amcasto commented 1 year ago

Hi, I'm getting the following error when I try to run phyloscanner_analyse_trees.R: Error in phyloscanner.analyse.trees(tree.directory, tree.file.regex, reconstruction.mode, : could not find function "phyloscanner.analyse.trees" Any suggestions? Thanks! Amanda

mdhall272 commented 1 year ago

Most likely phyloscannerR is not installed - have you followed the instructions in the manual? From within R, run devtools::install on the phyloscannerR directory that comes as part of the package.